Package: contsurvplot 0.2.1

Robin Denz

contsurvplot: Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome

Graphically display the (causal) effect of a continuous variable on a time-to-event outcome using multiple different types of plots based on g-computation. Those functions include, among others, survival area plots, survival contour plots, survival quantile plots and 3D surface plots. Due to the use of g-computation, all plot allow confounder-adjustment naturally. For details, see Robin Denz, Nina Timmesfeld (2023) <doi:10.1097/EDE.0000000000001630>.

Authors:Robin Denz [aut, cre]

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NEWS

# Install 'contsurvplot' in R:

install.packages('contsurvplot', repos = c('https://robindenz1.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/robindenz1/contsurvplot/issues

On CRAN:

12 exports 12 stars 1.65 score 106 dependencies 45 scripts 338 downloads

Last updated 11 months agofrom:3b83f5f2cc. Checks:OK: 1 NOTE: 4 ERROR: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 10 2024
R-4.5-win	NOTE	Sep 10 2024
R-4.5-linux	NOTE	Sep 10 2024
R-4.4-win	NOTE	Sep 10 2024
R-4.4-mac	NOTE	Sep 10 2024
R-4.3-win	ERROR	Sep 10 2024
R-4.3-mac	ERROR	Sep 10 2024

Exports:curve_cont plot_surv_3Dsurface plot_surv_animated plot_surv_area plot_surv_at_t plot_surv_contour plot_surv_heatmap plot_surv_lines plot_surv_matrix plot_surv_quantiles plot_surv_rmst plot_surv_rmtl

Dependencies:backports base64enc bslib cachem checkmate cli cluster cmprsk codetools colorspace data.table diagram digest doParallel dplyr evaluate fansi farver fastmap fontawesome foreach foreign Formula fs future future.apply generics ggplot2 globals glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband iterators jquerylib jsonlite KernSmooth knitr labeling lattice lava lifecycle listenv magrittr MASS Matrix MatrixModels memoise mets mgcv mime multcomp munsell mvtnorm nlme nnet numDeriv parallelly pillar pkgconfig plotrix polspline prodlim progressr Publish quantreg R6 ranger rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen riskRegression rlang rmarkdown rms rpart rstudioapi sandwich sass scales shape SparseM SQUAREM stringi stringr survival TH.data tibble tidyselect timereg tinytex utf8 vctrs viridis viridisLite withr xfun yaml zoo

Visualizing the Causal Effect of a Continuous Variable on a Time-To-Event Outcome

Robin Denz

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Sep 10 2024.

Last update: 2023-07-19
Started: 2022-04-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Visualize the Effect of a Continuous Variable on a Time-To-Event Outcome	contsurvplot-package
Estimate Counterfactual Survival or Failure Probabilities for Levels of a Continuous Variable	curve_cont
Plot the Survival Curve or CIF Dependent on a Continuous Variable as a 3D Surface	plot_surv_3Dsurface
Create an Animated Plot of Survival Curves of CIFs as a Function of a Continuous Variable	plot_surv_animated
Plot a Survival Area Plot for the Effect of a Continuous Variable on a Time-To-Event Outcome	plot_surv_area
Plot the Survival Probability or CIF at a Fixed Point in Time as a Function of a Continuous Variable	plot_surv_at_t
Create a Contour Plot of the Effect of a Continuous Covariate on the Survival Probability	plot_surv_contour
Plot a Heatmap of the Effect of a Continuous Covariate on a Time-To-Event Outcome	plot_surv_heatmap
Plot Individual Survival Curves or CIFs for Specific Values of a Continuous Covariate	plot_surv_lines
Plot a Discretized Heatmap of the Effect of a Continuous Covariate on a Time-To-Event Outcome	plot_surv_matrix
Plot Survival Time Quantiles as a Function of a Continuous Variable	plot_surv_quantiles
Plot the Effect of a Continuous Variable on the Restricted Mean Survival Time	plot_surv_rmst
Plot the Effect of a Continuous Variable on the Restricted Mean Time Lost	plot_surv_rmtl